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SEC5B Exocyst complex component SEC5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838713, updated on 18-Sep-2024

Summary

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Official Symbol
SEC5B
Official Full Name
Exocyst complex component SEC5
Primary source
TAIR:AT1G21170
Locus tag
AT1G21170
See related
Araport:AT1G21170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See SEC5B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Sequence:
Chromosome: 1; NC_003070.9 (7412830..7419643)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Vacuolar iron transporter (VIT) family protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene eukaryotic translation initiation factor 2 (eIF-2) family protein Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Hála M, et al. Plant Cell, 2008 May. PMID 18492870, Free PMC Article
  2. RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis. Safavian D, et al. Plant Physiol, 2015 Dec. PMID 26443677, Free PMC Article
  3. bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis. Frerigmann H, et al. Plant Physiol, 2014 Sep. PMID 25049362, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332488.1
NM_101971.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within acceptance of pollen IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen germination IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen tube growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of exocyst IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Exocyst complex component SEC5
NP_173541.1
  • SEC5B; BEST Arabidopsis thaliana protein match is: exocyst complex component sec5 (TAIR:AT1G76850.1); Has 822 Blast hits to 808 proteins in 207 species: Archae - 0; Bacteria - 24; Metazoa - 388; Fungi - 169; Plants - 124; Viruses - 8; Other Eukaryotes - 109 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7412830..7419643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101971.3 → NP_173541.1  Exocyst complex component SEC5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173541.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HWE6, Q9LMN3, Q9LPV1
    UniProtKB/TrEMBL
    A0A178WNA9, A0A5S9VCW3, A0A654EBR6
    Conserved Domains (1) summary
    pfam15469
    Location:268 → 440
    Sec5; Exocyst complex component Sec5

  2. NM_001332488.1 → NP_001322652.1  Exocyst complex component SEC5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WNA9, A0A1P8AUR0, A0A5S9VCW3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HWE6.1

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