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IGMT4 O-methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838709, updated on 18-Sep-2024

Summary

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Official Symbol
IGMT4
Official Full Name
O-methyltransferase family protein
Primary source
TAIR:AT1G21130
Locus tag
AT1G21130
See related
Araport:AT1G21130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
indole glucosinolate O-methyltransferase 4; T22I11.4; T22I11_4
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Genomic context

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See IGMT4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (7398814..7400736, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene O-methyltransferase family protein Neighboring gene O-methyltransferase family protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PP2A-B'γ modulates foliar trans-methylation capacity and the formation of 4-methoxy-indol-3-yl-methyl glucosinolate in Arabidopsis leaves. Rahikainen M, et al. Plant J, 2017 Jan. PMID 27598402
  2. Plant O-methyltransferases: molecular analysis, common signature and classification. Ibrahim RK, et al. Plant Mol Biol, 1998 Jan. PMID 9484457
  3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101967.4
NM_179362.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
O-methyltransferase family protein
NP_173537.1
  • O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1); Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1; Bacteria - 963; Metazoa - 105; Fungi - 662; Plants - 1542; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
NP_849693.1
  • O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21120.1); Has 1760 Blast hits to 1758 proteins in 271 species: Archae - 0; Bacteria - 265; Metazoa - 8; Fungi - 22; Plants - 1437; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7398814..7400736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101967.4 → NP_173537.1  O-methyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173537.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A2RVV0, Q0WUM9, Q8LGI0, Q9LPU8
    UniProtKB/TrEMBL
    A0A654EGS4, A0A7G2DYD6
    Conserved Domains (2) summary
    pfam08100
    Location:40 → 95
    dimerization; dimerization domain
    cl17173
    Location:150 → 354
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. NM_179362.1 → NP_849693.1  O-methyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849693.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LPU8
    Conserved Domains (2) summary
    pfam08100
    Location:40 → 95
    Dimerization; Dimerization domain
    cl17173
    Location:141 → 274
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPU8.1

Gene LinkOut

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