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RAD3-like DNA-binding helicase protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838662, updated on 18-Sep-2024

Summary

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Official Full Name
RAD3-like DNA-binding helicase protein
Primary source
TAIR:AT1G20720
Locus tag
AT1G20720
See related
Araport:AT1G20720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2D10.21; F2D10_21
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Genomic context

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Location:
chromosome: 1
Exon count:
29
Sequence:
Chromosome: 1; NC_003070.9 (7185288..7192841, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene WUSCHEL related homeobox 14 Neighboring gene WUSCHEL related homeobox 10 Neighboring gene transport/golgi organization-like protein, putative (DUF833) Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101924.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RAD3-like DNA-binding helicase protein
NP_173495.5
  • RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7185288..7192841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332462.1 → NP_001322805.1  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WI34, A0A1P8AV25, A0A654EDH9

  2. NM_101924.6 → NP_173495.5  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173495.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WI34, A0A654EDH9, F4HUN4
    Conserved Domains (3) summary
    TIGR00604
    Location:31 → 770
    rad3; DNA repair helicase (rad3)
    pfam13307
    Location:556 → 763
    Helicase_C_2; Helicase C-terminal domain
    cl21455
    Location:32 → 318
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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