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ATDUF1 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838627, updated on 18-Sep-2024

Summary

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Official Symbol
ATDUF1
Official Full Name
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1)
Primary source
TAIR:AT1G03300
Locus tag
AT1G03300
See related
Araport:AT1G03300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DOMAIN OF UNKNOWN FUNCTION 724 1; DUF1; F15K9.10; F15K9_10
Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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Genomic context

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See ATDUF1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (811033..813086, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene ELKS/Rab6-interacting/CAST family protein Neighboring gene debranching enzyme 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtDuf4 were found to express in the root tips. They were localized in nucleus.
    Title: Characterization of DUF724 gene family in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_100212.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1)
NP_171829.1
  • DOMAIN OF UNKNOWN FUNCTION 724 1 (ATDUF1); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 656 Blast hits to 530 proteins in 96 species: Archae - 2; Bacteria - 31; Metazoa - 151; Fungi - 36; Plants - 287; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    811033..813086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100212.1 → NP_171829.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171829.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVT1
    UniProtKB/TrEMBL
    A0A654E6D5
    Conserved Domains (3) summary
    smart00743
    Location:223 → 279
    Agenet; Tudor-like domain present in plant sequences
    pfam05266
    Location:484 → 669
    DUF724; Protein of unknown function (DUF724)
    pfam05641
    Location:6 → 71
    Agenet; Agenet domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVT1.1

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