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Alba DNA/RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838610, updated on 18-Sep-2024

Summary

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Official Full Name
Alba DNA/RNA-binding protein
Primary source
TAIR:AT1G20220
Locus tag
AT1G20220
See related
Araport:AT1G20220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20H2.2; T20H2_2
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (7004824..7007717, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PAM domain (PCI/PINT associated module) protein Neighboring gene tRNA-Asp Neighboring gene Thioredoxin superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis. Yuan W, et al. Sci Adv, 2019 May. PMID 31106272, Free PMC Article
  2. ALBA proteins confer thermotolerance through stabilizing HSF messenger RNAs in cytoplasmic granules. Tong J, et al. Nat Plants, 2022 Jul. PMID 35817823
  3. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article
  4. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871
  5. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The AtALBA1 and AtALBA2 protein complex is the genic R-loop reader crucial for genome stability in Arabidopsis [ALBA2]
    Title: ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101874.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Alba DNA/RNA-binding protein
NP_564108.1
  • Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1); Has 46942 Blast hits to 19054 proteins in 1334 species: Archae - 23; Bacteria - 15382; Metazoa - 15943; Fungi - 3395; Plants - 5072; Viruses - 633; Other Eukaryotes - 6494 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7004824..7007717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101874.3 → NP_564108.1  Alba DNA/RNA-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564108.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EDD5, Q944A2
    Conserved Domains (1) summary
    pfam01918
    Location:19 → 83
    Alba; Alba
Nucleotide Protein
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