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Transcription factor TFIIE, alpha subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838581, updated on 18-Sep-2024

Summary

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Official Full Name
Transcription factor TFIIE, alpha subunit
Primary source
TAIR:AT1G03280
Locus tag
AT1G03280
See related
Araport:AT1G03280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15K9.12; F15K9_12
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (802970..807066)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNARE associated Golgi protein family Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene ELKS/Rab6-interacting/CAST family protein Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) Neighboring gene debranching enzyme 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001331399.1
NM_001331400.1
NM_100210.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription factor TFIIE, alpha subunit
NP_563681.1
  • Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 759 Blast hits to 706 proteins in 191 species: Archae - 5; Bacteria - 10; Metazoa - 313; Fungi - 190; Plants - 108; Viruses - 11; Other Eukaryotes - 122 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    802970..807066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100210.5 → NP_563681.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563681.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6M9, Q93ZW3
    Conserved Domains (1) summary
    smart00531
    Location:48 → 214
    TFIIE; Transcription initiation factor IIE

  2. NM_001331399.1 → NP_001320448.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6M9, Q93ZW3
    Conserved Domains (1) summary
    smart00531
    Location:48 → 214
    TFIIE; Transcription initiation factor IIE

  3. NM_001331400.1 → NP_001320447.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6M9, Q93ZW3
    Conserved Domains (1) summary
    smart00531
    Location:48 → 214
    TFIIE; Transcription initiation factor IIE
Nucleotide Protein
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