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TTN10 GINS complex protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838490, updated on 18-Sep-2024

Summary

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Official Symbol
TTN10
Official Full Name
GINS complex protein
Primary source
TAIR:AT1G19080
Locus tag
AT1G19080
See related
Araport:AT1G19080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14D16.33; Partner of SLD5 3; PSF3; TITAN 10
Summary
This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.
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Genomic context

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See TTN10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (6584241..6586517)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene response regulator 7 Neighboring gene hypothetical protein (DUF626) Neighboring gene F-box family protein Neighboring gene uncharacterized protein Neighboring gene receptor-like serine/threonine kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice. Shultz RW, et al. Plant Physiol, 2007 Aug. PMID 17556508, Free PMC Article
  2. Identification of genes required for embryo development in Arabidopsis. Tzafrir I, et al. Plant Physiol, 2004 Jul. PMID 15266054, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001198102.1
NM_101766.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated DNA replication ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of GINS complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GINS complex protein
NP_001185031.1
  • TITAN 10 (TTN10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication, embryo development ending in seed dormancy; LOCATED IN: GINS complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf3 (InterPro:IPR010492), GINS complex (InterPro:IPR021151); BEST Arabidopsis thaliana protein match is: GINS complex protein (TAIR:AT3G55490.1).
NP_173342.2
  • TITAN 10 (TTN10); CONTAINS InterPro DOMAIN/s: GINS complex, subunit Psf3 (InterPro:IPR010492), GINS complex (InterPro:IPR021151); BEST Arabidopsis thaliana protein match is: GINS complex protein (TAIR:AT3G55490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6584241..6586517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198102.1 → NP_001185031.1  GINS complex protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185031.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCB9, A0A384LKD0, A0MDR5, Q6NNH6
    Conserved Domains (2) summary
    cd11713
    Location:61 → 167
    GINS_A_psf3; Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3)
    cd21693
    Location:4 → 66
    GINS_B_Psf3; beta-strand (B) domain of GINS complex protein Psf3

  2. NM_101766.3 → NP_173342.2  GINS complex protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173342.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCB9, A0A384LKD0, A0MDR5, Q6NNH6
    Conserved Domains (2) summary
    cd11713
    Location:61 → 167
    GINS_A_psf3; Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3)
    cd21693
    Location:4 → 66
    GINS_B_Psf3; beta-strand (B) domain of GINS complex protein Psf3
Nucleotide Protein
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