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RmlC-like cupins superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838479, updated on 18-Sep-2024

Summary

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Official Full Name
RmlC-like cupins superfamily protein
Primary source
TAIR:AT1G18980
Locus tag
AT1G18980
See related
Araport:AT1G18980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14D16.13; F14D16_13
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (6557181..6558115, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene germin-like protein 4 Neighboring gene myosin-binding protein, putative (Protein of unknown function, DUF593) Neighboring gene Homeodomain-like superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101755.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RmlC-like cupins superfamily protein
NP_173332.1
  • RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein 4 (TAIR:AT1G18970.1); Has 1578 Blast hits to 1564 proteins in 115 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 29; Plants - 1449; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6557181..6558115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101755.3 → NP_173332.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173332.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LMC9
    UniProtKB/TrEMBL
    A0A178WFI0, A0A384L6L3, A0A7G2DVP6, Q29PR5
    Conserved Domains (1) summary
    cd02241
    Location:29 → 218
    cupin_OxOx; Oxalate oxidase (germin), cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LMC9.1

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