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PnsB4 NDH dependent flow 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838455, updated on 18-Sep-2024

Summary

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Official Symbol
PnsB4
Official Full Name
NDH dependent flow 6
Primary source
TAIR:AT1G18730
Locus tag
AT1G18730
See related
Araport:AT1G18730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6A14.16; F6A14_16; NDF6; NDH dependent flow 6; Photosynthetic NDH subcomplex B 4
Summary
likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.
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Genomic context

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See PnsB4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (6460403..6462344)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene myb domain protein 47 Neighboring gene ER membrane protein, putative (DUF962) Neighboring gene ncRNA Neighboring gene ROH1, putative (DUF793) Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NDF6: a thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis. Ishikawa N, et al. Plant Cell Physiol, 2008 Jul. PMID 18535009
  2. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. NDF6 is a novel subunit of chloroplastic NDH that was added to terrestrial plants during evolution. [NDF6]
    Title: NDF6: a thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084090.2
NM_001123834.1
NM_001123835.4
NM_001332365.1
NM_101731.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in photosynthetic electron transport in photosystem I IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within photosynthetic electron transport in photosystem I TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of NAD(P)H dehydrogenase complex (plastoquinone) IEA
Inferred from Electronic Annotation
more info
  
part_of NAD(P)H dehydrogenase complex (plastoquinone) IMP
Inferred from Mutant Phenotype
more info
 PubMed 
part_of NAD(P)H dehydrogenase complex (plastoquinone) NAS
Non-traceable Author Statement
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane HDA PubMed 
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NDH dependent flow 6
NP_001077559.2
  • NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001117306.1
  • NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001117307.1
  • NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_173308.2
  • NDH dependent flow 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6460403..6462344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101731.5 → NP_173308.2  NDH dependent flow 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173308.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RXS1, Q9M9U4
    UniProtKB/TrEMBL
    A0A654EB62
    Conserved Domains (1) summary
    PLN00180
    Location:4 → 175
    PLN00180; NDF6 (NDH-dependent flow 6); Provisional

  2. NM_001123835.4 → NP_001117307.1  NDH dependent flow 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117307.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H6Z4
    Conserved Domains (1) summary
    PLN00180
    Location:4 → 137
    PLN00180; NDF6 (NDH-dependent flow 6); Provisional

  3. NM_001084090.2 → NP_001077559.2  NDH dependent flow 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077559.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRZ5
    Conserved Domains (1) summary
    PLN00180
    Location:4 → 137
    PLN00180; NDF6 (NDH-dependent flow 6); Provisional

  4. NM_001123834.1 → NP_001117306.1  NDH dependent flow 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117306.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EB62, F4ICC6
    Conserved Domains (1) summary
    PLN00180
    Location:4 → 174
    PLN00180; NDF6 (NDH-dependent flow 6); Provisional

  5. NM_001332365.1 → NP_001321859.1  NDH dependent flow 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AS98
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RXS1.1

Gene LinkOut

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