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Serine/Threonine kinase family catalytic domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838420, updated on 18-Sep-2024

Summary

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Official Full Name
Serine/Threonine kinase family catalytic domain protein
Primary source
TAIR:AT1G18390
Locus tag
AT1G18390
See related
Araport:AT1G18390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15H18.25; F15H18_25
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (6325536..6330179)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene MAP kinase kinase 7 Neighboring gene ATP binding microtubule motor family protein Neighboring gene ncRNA Neighboring gene BR enhanced expression 1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance. Lim CW, et al. Plant Cell Rep, 2015 Mar. PMID 25533478
  2. Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Shin KH, et al. Plant Cell Rep, 2015 Mar. PMID 25510357
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LRK10L1.2 is involved in abscisic acid-mediated signaling and drought resistance.[LRK10L1]
    Title: The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance.
  2. Alternative splicing affects differential localization of AtLRK10L1.2 protein variants.
    Title: Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation.
Submit: New GeneRIF Correction

General gene information

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NM_001160877.1
NM_101697.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within cellular response to abscisic acid stimulus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cellular response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Serine/Threonine kinase family catalytic domain protein
NP_001154349.1
  • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 128125 Blast hits to 126473 proteins in 4812 species: Archae - 110; Bacteria - 14433; Metazoa - 47787; Fungi - 10757; Plants - 35416; Viruses - 568; Other Eukaryotes - 19054 (source: NCBI BLink).
NP_173275.4
  • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 21064 Blast hits to 20752 proteins in 1151 species: Archae - 24; Bacteria - 3918; Metazoa - 5271; Fungi - 1719; Plants - 7999; Viruses - 19; Other Eukaryotes - 2114 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6325536..6330179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101697.6 → NP_173275.4  Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173275.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9V131
    Conserved Domains (3) summary
    smart00219
    Location:341 → 610
    TyrKc; Tyrosine kinase, catalytic domain
    pfam14380
    Location:150 → 237
    WAK_assoc; Wall-associated receptor kinase C-terminal
    cl21453
    Location:344 → 613
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001160877.1 → NP_001154349.1  Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154349.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IAQ9, P0C5E2, Q5BQ05, Q5Q0G6, Q8RX30
    UniProtKB/TrEMBL
    A0A178WH09
    Conserved Domains (3) summary
    smart00219
    Location:347 → 616
    TyrKc; Tyrosine kinase, catalytic domain
    pfam14380
    Location:180 → 243
    WAK_assoc; Wall-associated receptor kinase C-terminal
    cl21453
    Location:350 → 619
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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