basal transcription factor complex subunit-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: basal transcription factor complex subunit-like protein
Primary source: TAIR:AT1G18340
Locus tag: AT1G18340
See related: Araport:AT1G18340
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F15H18.15; F15H18_15
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 11

Sequence:: Chromosome: 1; NC_003070.9 (6311443..6313931, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_101692.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in nucleotide-excision repair	IEA Inferred from Electronic Annotation more info
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
part_of transcription factor TFIIH core complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: basal transcription factor complex subunit-like protein

NP_564050.1

basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 359 Blast hits to 354 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 143; Plants - 47; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

6311443..6313931 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_101692.2 → NP_564050.1 basal transcription factor complex subunit-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564050.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LF41, Q9LPQ2

UniProtKB/TrEMBL

A0A5S9V0V9, A0A654ECV9

Conserved Domains (1) summary

pfam03850
Location:22 → 277

Tfb4; Transcription factor Tfb4