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ATLP-1 Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838405, updated on 18-Sep-2024

Summary

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Official Symbol
ATLP-1
Official Full Name
Pathogenesis-related thaumatin superfamily protein
Primary source
TAIR:AT1G18250
Locus tag
AT1G18250
See related
Araport:AT1G18250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
encodes a thaumatin-like protein
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Genomic context

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See ATLP-1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (6276777..6278258, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene HCP-like superfamily protein Neighboring gene zein-binding protein (Protein of unknown function, DUF593)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001035987.1
NM_101683.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pathogenesis-related thaumatin superfamily protein
NP_001031064.1
  • ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_173261.1
  • ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 1566 Blast hits to 1554 proteins in 172 species: Archae - 0; Bacteria - 23; Metazoa - 54; Fungi - 80; Plants - 1398; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6276777..6278258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101683.2 → NP_173261.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173261.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P50699, Q9LM26
    UniProtKB/TrEMBL
    A0A178W6R7, A0A5S9UZK5, A0A654EB05
    Conserved Domains (1) summary
    cd09218
    Location:22 → 238
    TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs

  2. NM_001035987.1 → NP_001031064.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031064.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6R7, A0A5S9UZK5, F4IAP1
    Conserved Domains (1) summary
    cd09218
    Location:23 → 239
    TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P50699.2

Gene LinkOut

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