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GC2 golgin Putative 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838398, updated on 18-Sep-2024

Summary

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Official Symbol
GC2
Official Full Name
golgin Putative 2
Primary source
TAIR:AT1G18190
Locus tag
AT1G18190
See related
Araport:AT1G18190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
golgin candidate 2; T10F20.19
Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508#Aei668 aa) portion of the protein.
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Genomic context

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See GC2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (6257851..6261501, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) Neighboring gene miscRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Localization and domain characterization of Arabidopsis golgin candidates. Latijnhouwers M, et al. J Exp Bot, 2007. PMID 18182439
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101679.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
golgin Putative 2
NP_173257.2
  • golgin candidate 2 (GC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: golgin candidate 1 (TAIR:AT2G19950.1); Has 50245 Blast hits to 32562 proteins in 2069 species: Archae - 503; Bacteria - 6561; Metazoa - 24889; Fungi - 4466; Plants - 2316; Viruses - 153; Other Eukaryotes - 11357 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6257851..6261501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101679.4 → NP_173257.2  golgin Putative 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173257.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B0F9L7, Q9LM30, Q9LMR9
    UniProtKB/TrEMBL
    A0A654EFW7
    Conserved Domains (1) summary
    pfam15694
    Location:6 → 213
    Med26_M; Mediator complex subunit 26 middle domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B0F9L7.1

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