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Class II aaRS and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838392, updated on 18-Sep-2024

Summary

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Official Full Name
Class II aaRS and biotin synthetases superfamily protein
Primary source
TAIR:AT1G18130
Locus tag
AT1G18130
See related
Araport:AT1G18130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10F20.13
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (6235895..6238799)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene laccase 1 Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables threonine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in threonyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Class II aaRS and biotin synthetases superfamily protein
NP_173251.1
  • Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1); Has 8735 Blast hits to 8735 proteins in 2871 species: Archae - 292; Bacteria - 5591; Metazoa - 245; Fungi - 244; Plants - 92; Viruses - 0; Other Eukaryotes - 2271 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6235895..6238799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101673.1 → NP_173251.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173251.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9V159, F4IAM7
    Conserved Domains (2) summary
    cl00266
    Location:72 → 158
    HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
    cl00268
    Location:17 → 72
    class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...
Nucleotide Protein
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