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5'-3' exonuclease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838389, updated on 18-Sep-2024

Summary

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Official Full Name
5'-3' exonuclease family protein
Primary source
TAIR:AT1G18090
Locus tag
AT1G18090
See related
Araport:AT1G18090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10F20.10
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (6224405..6227822)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein Neighboring gene ncRNA Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101671.5
NM_179353.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
5'-3' exonuclease family protein
NP_564047.1
  • 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink).
NP_849684.1
  • 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2139 Blast hits to 2052 proteins in 399 species: Archae - 267; Bacteria - 71; Metazoa - 522; Fungi - 572; Plants - 187; Viruses - 16; Other Eukaryotes - 504 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6224405..6227822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101671.5 → NP_564047.1  5'-3' exonuclease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564047.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W174, A0A654EBM3, A0A7G2DU39, Q94A33
    Conserved Domains (2) summary
    cd09901
    Location:223 → 295
    H3TH_FEN1-like; H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1
    cd09857
    Location:1 → 207
    PIN_EXO1; PIN domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs

  2. NM_179353.2 → NP_849684.1  5'-3' exonuclease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849684.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9V119, A0A7G2DU39, F4IAM4
    Conserved Domains (2) summary
    cd09901
    Location:223 → 295
    H3TH_FEN1-like; H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1
    cd09857
    Location:1 → 209
    PIN_EXO1; FEN-like PIN domains of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs
Nucleotide Protein
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