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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838376, updated on 18-Sep-2024

Summary

Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G26900
Locus tag
AT1G26900
See related
Araport:AT1G26900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2P11.9; T2P11_9
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Genomic context

Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9319643..9321512, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L34e superfamily protein Neighboring gene ncRNA Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene Ribosomal protein L16p/L10e family protein Neighboring gene miscRNA

General gene information

NM_102454.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion  

General protein information

Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_174012.1
  • Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 36640 Blast hits to 13575 proteins in 201 species: Archae - 0; Bacteria - 9; Metazoa - 54; Fungi - 45; Plants - 36058; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9319643..9321512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102454.2 → NP_174012.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174012.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVG8
    UniProtKB/TrEMBL
    A0A178W7C2, A0A5S9W1Z1
    Conserved Domains (5) summary
    TIGR00756
    Location:91 → 124
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:295 → 322
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:396 → 425
    PPR; PPR repeat
    pfam12854
    Location:164 → 187
    PPR_1; PPR repeat
    pfam13041
    Location:392 → 443
    PPR_2; PPR repeat family
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