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Disease resistance protein (TIR-NBS class) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838338, updated on 18-Sep-2024

Summary

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Official Full Name
Disease resistance protein (TIR-NBS class)
Primary source
TAIR:AT1G17615
Locus tag
AT1G17615
See related
Araport:AT1G17615
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1L3.31; F1L3_31
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (6059389..6060851)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit A8 Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS class) Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The truncated TNL receptor TN2-mediated immune responses require ADR1 function. Wang W, et al. Plant J, 2021 Nov. PMID 34396631
  2. CAMTA3 repressor destabilization triggers TIR domain protein TN2-mediated autoimmunity in the Arabidopsis exo70B1 mutant. Liu N, et al. Plant Cell, 2024 May 1. PMID 38309956,
  3. TIR-NB-LRR immune receptor SOC3 pairs with truncated TIR-NB protein CHS1 or TN2 to monitor the homeostasis of E3 ligase SAUL1. Liang W, et al. New Phytol, 2019 Mar. PMID 30317650
  4. A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant. Zhao T, et al. PLoS Genet, 2015 Jan. PMID 25617755, Free PMC Article
  5. A Truncated TIR-NBS Protein TN10 Pairs with Two Clustered TIR-NBS-LRR Immune Receptors and Contributes to Plant Immunity in Arabidopsis. Chen Y, et al. Int J Mol Sci, 2021 Apr 13. PMID 33924478, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CAMTA3 repressor destabilization triggers TIR domain protein TN2-mediated autoimmunity in the Arabidopsis exo70B1 mutant.
    Title: CAMTA3 repressor destabilization triggers TIR domain protein TN2-mediated autoimmunity in the Arabidopsis exo70B1 mutant.
  2. The truncated TNL receptor TN2-mediated immune responses require ADR1 function.
    Title: The truncated TNL receptor TN2-mediated immune responses require ADR1 function.
  3. By using CRISPR/Cas9 technology, genetic analysis and biochemical assays, it was discovered that SOC3 pairs with different truncated TN proteins, CHS1 or TN2, to monitor either the disappearance or overaccumulation of SAUL1, respectively. The differential pairing results in autoimmunity with distinct morphological outcomes. [TN2]
    Title: TIR-NB-LRR immune receptor SOC3 pairs with truncated TIR-NB protein CHS1 or TN2 to monitor the homeostasis of E3 ligase SAUL1.
  4. Our data are consistent with a speculative model wherein pathogen effectors could evolve to target EXO70B1 to manipulate plant secretion machinery. TN2 could monitor EXO70B1 integrity as part of an immune receptor complex. [TN2]
    Title: A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within defense response to fungus IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of plant-type hypersensitive response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
Disease resistance protein (TIR-NBS class)
NP_173205.1
  • Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1); Has 4595 Blast hits to 4465 proteins in 213 species: Archae - 2; Bacteria - 136; Metazoa - 33; Fungi - 0; Plants - 4419; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6059389..6060851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101624.2 → NP_173205.1  Disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173205.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WC89, Q4PT31
    Conserved Domains (1) summary
    PLN03210
    Location:15 → 345
    PLN03210; Resistant to P. syringae 6; Provisional
Nucleotide Protein
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