D27 beta-carotene isomerase D27-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: D27
Official Full Name: beta-carotene isomerase D27-like protein
Primary source: TAIR:AT1G03055
Locus tag: AT1G03055
See related: Araport:AT1G03055
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: A. thaliana homolog of rice D27; AtD27; DWARF27
Summary: Encodes the ortholog of rice D27. It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.
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Genomic context

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See D27 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 7

Sequence:: Chromosome: 1; NC_003070.9 (710018..711857, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The Arabidopsis D27-LIKE1 is a cis/cis/trans-beta-carotene isomerase that contributes to Strigolactone biosynthesis and negatively impacts ABA level.
Title: The Arabidopsis D27-LIKE1 is a cis/cis/trans-β-carotene isomerase that contributes to Strigolactone biosynthesis and negatively impacts ABA level.
AtD27 operates on a nonmobile precursor upstream of MAX1 in the strigolactone biosynthesis pathway. [AtD27]
Title: The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones.

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Pathways from PubChem

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General gene information

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Homology

Orthologs from OrthoDB

NM_100187.3

Supported by ESTs:

NM_202019.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables beta-carotene isomerase activity	IEA Inferred from Electronic Annotation more info
enables iron ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within secondary shoot formation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within strigolactone biosynthetic process	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plastid	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: beta-carotene isomerase D27-like protein

NP_563673.1

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

NP_973748.1

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

710018..711857 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_100187.3 → NP_563673.1 beta-carotene isomerase D27-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_563673.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q7XA78

UniProtKB/TrEMBL

A0A178WL30, A0A5S9SB86, A0A654E7K8

Conserved Domains (1) summary

pfam13225
Location:160 → 242

DUF4033; Domain of unknown function (DUF4033)
NM_202019.2 → NP_973748.1 beta-carotene isomerase D27-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973748.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WJH9, F4HZB1

Conserved Domains (1) summary

pfam13225
Location:160 → 187

DUF4033; Domain of unknown function (DUF4033)