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Metal-dependent phosphohydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838304, updated on 18-Sep-2024

Summary

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Official Full Name
Metal-dependent phosphohydrolase
Primary source
TAIR:AT1G17330
Locus tag
AT1G17330
See related
Araport:AT1G17330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (5929826..5931926)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene MADS-box transcription factor family protein Neighboring gene Phosphoinositide phosphatase family protein Neighboring gene SAUR-like auxin-responsive protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Short- and Long-Term Effects of UVA on Arabidopsis Are Mediated by a Novel cGMP Phosphodiesterase. Isner JC, et al. Curr Biol, 2019 Aug 5. PMID 31353185, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101594.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Metal-dependent phosphohydrolase
NP_173176.1
  • Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); Has 1677 Blast hits to 1677 proteins in 841 species: Archae - 70; Bacteria - 1404; Metazoa - 0; Fungi - 90; Plants - 42; Viruses - 5; Other Eukaryotes - 66 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5929826..5931926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101594.3 → NP_173176.1  Metal-dependent phosphohydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173176.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9UUM0, A0A654EAQ8, Q8GUM8
    Conserved Domains (1) summary
    COG1418
    Location:8 → 220
    RnaY; HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]
Nucleotide Protein
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