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STIPL1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838277, updated on 18-Sep-2024

Summary

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Official Symbol
STIPL1
Official Full Name
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
Primary source
TAIR:AT1G17070
Locus tag
AT1G17070
See related
Araport:AT1G17070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D23.23; F20D23_23; SPLICEOSOMAL TIMEKEEPER LOCUS1
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Genomic context

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See STIPL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (5837590..5840332)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene solanesyl diphosphate synthase 2 Neighboring gene uncharacterized protein Neighboring gene cytochrome p450 72c1 Neighboring gene ncRNA Neighboring gene Ribosomal protein L18ae family Neighboring gene uncharacterized protein Neighboring gene SOUL heme-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects. Jones MA, et al. Plant Cell, 2012 Oct. PMID 23110899, Free PMC Article
  2. NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis. Dolata J, et al. EMBO J, 2015 Feb 12. PMID 25568310, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. STIPL1 is associated with circadian clock functions.
    Title: Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.
Submit: New GeneRIF Correction

General gene information

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NM_101567.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables U1 snRNP binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nuclear lumen IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
NP_173150.1
  • GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5837590..5840332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101567.3 → NP_173150.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173150.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56W84, Q8LEM9, Q9SHG6
    UniProtKB/TrEMBL
    A0A178W428
    Conserved Domains (3) summary
    pfam01585
    Location:200 → 243
    G-patch; G-patch domain
    pfam07842
    Location:420 → 687
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam12457
    Location:6 → 105
    TIP_N; Tuftelin interacting protein N terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SHG6.1

Gene LinkOut

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