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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838255, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G16840
Locus tag
AT1G16840
See related
Araport:AT1G16840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17F16.27
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (5762694..5764184, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Reticulon family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene Ubiquitin-specific protease family C19-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001332268.1
NM_101545.4
NM_179345.2
NM_179346.4
NM_202117.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_564007.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_849676.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_849677.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_973846.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5762694..5764184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101545.4 → NP_564007.1  uncharacterized protein AT1G16840 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564007.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDG2, Q9FZ44

  2. NM_001332268.1 → NP_001321908.1  uncharacterized protein AT1G16840 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8W589

  3. NM_179345.2 → NP_849676.1  uncharacterized protein AT1G16840 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849676.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8W589

  4. NM_179346.4 → NP_849677.1  uncharacterized protein AT1G16840 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849677.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDG2, Q9FZ44

  5. NM_202117.2 → NP_973846.1  uncharacterized protein AT1G16840 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973846.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDG2, Q9FZ44
Nucleotide Protein
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