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vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838253, updated on 18-Sep-2024

Summary

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Official Full Name
vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein
Primary source
TAIR:AT1G16820
Locus tag
AT1G16820
See related
Araport:AT1G16820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17F16.15
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (5756835..5758653, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Inorganic H pyrophosphatase family protein Neighboring gene ribosomal protein-like protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene 7-dehydrocholesterol reductase-like protein Neighboring gene ncRNA Neighboring gene Reticulon family protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ammonium Accumulation Caused by Reduced Tonoplast V-ATPase Activity in Arabidopsis thaliana. Liang G, et al. Int J Mol Sci, 2020 Dec 22. PMID 33374906, Free PMC Article
  2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Ammonium Accumulation Caused by Reduced Tonoplast V-ATPase Activity in Arabidopsis thaliana.
    Title: Ammonium Accumulation Caused by Reduced Tonoplast V-ATPase Activity in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001198087.2
NM_001332265.1
NM_001332266.1
NM_101543.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein
NP_001185016.1
  • vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2).
NP_173126.1
  • vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2); Has 151 Blast hits to 150 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5756835..5758653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101543.4 → NP_173126.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173126.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I600
    Conserved Domains (1) summary
    TIGR01042
    Location:32 → 68
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

  2. NM_001332265.1 → NP_001322038.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DTR5, Q84TI5
    Conserved Domains (1) summary
    TIGR01042
    Location:1 → 23
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

  3. NM_001198087.2 → NP_001185016.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185016.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DTR6, F4I601
    Conserved Domains (1) summary
    TIGR01042
    Location:4 → 41
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

  4. NM_001332266.1 → NP_001322037.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DTR5, Q84TI5
    Conserved Domains (1) summary
    TIGR01042
    Location:1 → 23
    V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit
Nucleotide Protein
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