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Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838237, updated on 18-Sep-2024

Summary

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Official Full Name
Chaperone DnaJ-domain superfamily protein
Primary source
TAIR:AT1G16680
Locus tag
AT1G16680
See related
Araport:AT1G16680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19K19.3; F19K19_3
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (5702153..5705892)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene Alpha-helical ferredoxin Neighboring gene p300/CBP acetyltransferase-related protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101528.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Chaperone DnaJ-domain superfamily protein
NP_173112.2
  • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G79030.1); Has 18225 Blast hits to 18222 proteins in 3146 species: Archae - 124; Bacteria - 7724; Metazoa - 3097; Fungi - 1583; Plants - 1765; Viruses - 36; Other Eukaryotes - 3896 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5702153..5705892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101528.4 → NP_173112.2  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173112.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WF66, A0A654EBG6, A0A7G2DVW3, F4I4I3
    Conserved Domains (4) summary
    PTZ00341
    Location:213 → 356
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
    pfam00226
    Location:291 → 355
    DnaJ; DnaJ domain
    pfam14901
    Location:388 → 484
    Jiv90; Cleavage inducing molecular chaperone
    cl09326
    Location:105 → 192
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins
Nucleotide Protein
Heading Accession and Version

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