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Per1-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838226, updated on 18-Sep-2024

Summary

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Official Full Name
Per1-like family protein
Primary source
TAIR:AT1G16560
Locus tag
AT1G16560
See related
Araport:AT1G16560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19K19.12; F19K19_12
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (5668384..5670708)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene molybdenum cofactor sulfurase (LOS5) (ABA3) Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene DNA-binding HORMA family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Arabidopsis Post-Glycosylphosphatidylinositol Attachment to Proteins Phospholipase 3 Like Genes. Bernat-Silvestre C, et al. Front Plant Sci, 2022. PMID 35222477, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035981.1
NM_001332232.1
NM_001332233.1
NM_001332234.1
NM_001332235.1
NM_001332236.1
NM_101520.3
NM_202113.2
NM_202114.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Per1-like family protein
NP_001031058.1
  • Per1-like family protein; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001319020.1
  • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 343 Blast hits to 337 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 158; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_973842.1
  • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_973843.1
  • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5668384..5670708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202113.2 → NP_973842.1  Per1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973842.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  2. NM_202114.2 → NP_973843.1  Per1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973843.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  3. NM_001332234.1 → NP_001323040.1  Per1-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  4. NM_001332235.1 → NP_001323041.1  Per1-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  5. NM_001332233.1 → NP_001323039.1  Per1-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  6. NM_001332236.1 → NP_001323042.1  Per1-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  7. NM_001332232.1 → NP_001319020.1  Per1-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like

  8. NM_001035981.1 → NP_001031058.1  Per1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031058.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I4H2
    Conserved Domains (1) summary
    pfam04080
    Location:61 → 271
    Per1; Per1-like

  9. NM_101520.3 → NP_173104.1  Per1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173104.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9US11, A0A654EAJ2, Q9FX73
    Conserved Domains (1) summary
    pfam04080
    Location:66 → 326
    Per1; Per1-like
Nucleotide Protein
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