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RDH2 rhodanese homologue 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838216, updated on 18-Sep-2024

Summary

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Official Symbol
RDH2
Official Full Name
rhodanese homologue 2
Primary source
TAIR:AT1G16460
Locus tag
AT1G16460
See related
Araport:AT1G16460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2; ATMST2; ATRDH2; F3O9.26; F3O9_26; MERCAPTOPYRUVATE SULFURTRANSFERASE; MERCAPTOPYRUVATE SULFURTRANSFERASE 2; MST2; rhodanese homologue 2; ST2; STR2; SULFURTRANSFERASE 2
Summary
encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.
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Genomic context

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See RDH2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (5619545..5622674, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene tRNA-Arg Neighboring gene proteasome subunit PAB1 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana. Cornilescu G, et al. Protein Sci, 2006 Dec. PMID 17088324, Free PMC Article
  2. Sulfurtransferases 1 and 2 play essential roles in embryo and seed development in Arabidopsis thaliana. Mao G, et al. J Biol Chem, 2011 Mar 4. PMID 21189252, Free PMC Article
  3. Plant mercaptopyruvate sulfurtransferases: molecular cloning, subcellular localization and enzymatic activities. Nakamura T, et al. Eur J Biochem, 2000 Sep. PMID 10951223
  4. Evidence for the existence of rhodanese (thiosulfate:cyanide sulfurtransferase) in plants: preliminary characterization of two rhodanese cDNAs from Arabidopsis thaliana. Hatzfeld Y, et al. FEBS Lett, 2000 Mar 24. PMID 10734224
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The incomplete penetrance of str1 embryo/seed phenotype is a result of functional STR2
    Title: Sulfurtransferases 1 and 2 play essential roles in embryo and seed development in Arabidopsis thaliana.
  2. Three-dimensional structure of the product of Arabidopsis thaliana gene At5g66040.1.
    Title: Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_001035979.1
NM_001198083.1
NM_001332227.1
NM_179344.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-mercaptopyruvate sulfurtransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables thiosulfate sulfurtransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables thiosulfate sulfurtransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables thiosulfate sulfurtransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryo development ending in seed dormancy IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
rhodanese homologue 2
NP_001031056.1
  • rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001185012.1
  • rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1).
NP_563998.1
  • rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1); Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162; Bacteria - 3582; Metazoa - 248; Fungi - 148; Plants - 95; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink).
NP_849675.1
  • rhodanese homologue 2 (RDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: mercaptopyruvate sulfurtransferase 1 (TAIR:AT1G79230.1); Has 6167 Blast hits to 6142 proteins in 1437 species: Archae - 162; Bacteria - 3582; Metazoa - 248; Fungi - 148; Plants - 95; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5619545..5622674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332226.1 → NP_001322506.1  rhodanese homologue 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU81, A0A5S9UQ58, A0A654EAI3

  2. NM_101511.6 → NP_563998.1  rhodanese homologue 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563998.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5B2, A0A7G2DTN7
    Conserved Domains (1) summary
    PLN02723
    Location:1 → 318
    PLN02723; 3-mercaptopyruvate sulfurtransferase

  3. NM_001198083.1 → NP_001185012.1  rhodanese homologue 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185012.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5B2, A0A7G2DTN7
    Conserved Domains (1) summary
    PLN02723
    Location:1 → 318
    PLN02723; 3-mercaptopyruvate sulfurtransferase

  4. NM_001035979.1 → NP_001031056.1  rhodanese homologue 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031056.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5B2, A0A7G2DTN7
    Conserved Domains (1) summary
    PLN02723
    Location:1 → 318
    PLN02723; 3-mercaptopyruvate sulfurtransferase

  5. NM_001332227.1 → NP_001322507.1  rhodanese homologue 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU99, A0A5S9UQ58, A0A654EAI3
    Conserved Domains (1) summary
    PLN02723
    Location:1 → 263
    PLN02723; 3-mercaptopyruvate sulfurtransferase

  6. NM_179344.2 → NP_849675.1  rhodanese homologue 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849675.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WQ03, Q24JL3, Q9M4F7, Q9S7Y9, Q9SA45
    UniProtKB/TrEMBL
    A0A7G2DTN7
    Conserved Domains (3) summary
    PLN02723
    Location:25 → 342
    PLN02723; 3-mercaptopyruvate sulfurtransferase
    cd01448
    Location:45 → 168
    TST_Repeat_1; Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it ...
    cd01449
    Location:216 → 330
    TST_Repeat_2; Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q24JL3.1

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