Aldolase-type TIM barrel family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Aldolase-type TIM barrel family protein
Primary source: TAIR:AT1G16350
Locus tag: AT1G16350
See related: Araport:AT1G16350
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F3O9.15; F3O9_15
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 5

Sequence:: Chromosome: 1; NC_003070.9 (5590756..5593098)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_101501.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables IMP dehydrogenase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytosol	HDA more info	PubMed
located_in nucleus	HDA more info	PubMed

General protein information

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Preferred Names: Aldolase-type TIM barrel family protein

NP_173085.1

Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G79470.1); Has 13531 Blast hits to 12775 proteins in 2707 species: Archae - 178; Bacteria - 7353; Metazoa - 466; Fungi - 180; Plants - 86; Viruses - 2; Other Eukaryotes - 5266 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

5590756..5593098

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_101501.3 → NP_173085.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173085.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SA34

UniProtKB/TrEMBL

A0A178WG28, A0A5S9UR41

Conserved Domains (1) summary

PLN02274
Location:1 → 502

PLN02274; inosine-5'-monophosphate dehydrogenase