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Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838164, updated on 18-Sep-2024

Summary

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Official Full Name
Tudor/PWWP/MBT superfamily protein
Primary source
TAIR:AT1G15940
Locus tag
AT1G15940
See related
Araport:AT1G15940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24D18.4; T24D18_4
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (5473359..5478405)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6 Neighboring gene DNA glycosylase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of the Cohesin Cofactor PDS5 (SPO76) During Meiosis and DNA Repair in Arabidopsis thaliana. Pradillo M, et al. Front Plant Sci, 2015. PMID 26648949, Free PMC Article
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101462.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within DNA repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in DNA repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in homologous recombination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within microsporogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Tudor/PWWP/MBT superfamily protein
NP_173046.2
  • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 113244 Blast hits to 64070 proteins in 2877 species: Archae - 468; Bacteria - 17745; Metazoa - 45816; Fungi - 13599; Plants - 5330; Viruses - 622; Other Eukaryotes - 29664 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5473359..5478405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101462.5 → NP_173046.2  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173046.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WPH2, Q9S9P0
    UniProtKB/TrEMBL
    A0A178WLC2, A0A654EAA4
    Conserved Domains (3) summary
    PTZ00121
    Location:410 → 989
    PTZ00121; MAEBL; Provisional
    cd20404
    Location:572 → 622
    Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    cl15079
    Location:34 → 247
    PDS5; Sister chromatid cohesion protein PDS5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S9P0.1

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