U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838163, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Primary source
TAIR:AT1G15930
Locus tag
AT1G15930
See related
Araport:AT1G15930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24D18.3; T24D18_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (5471316..5473048)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene XH/XS domain-containing protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
  3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  4. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
  5. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_101461.5
NM_179342.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosolic ribosome HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
NP_173045.1
  • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2); Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248; Bacteria - 0; Metazoa - 315; Fungi - 181; Plants - 131; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
NP_849673.1
  • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT2G32060.2); Has 1044 Blast hits to 1044 proteins in 336 species: Archae - 248; Bacteria - 0; Metazoa - 315; Fungi - 181; Plants - 131; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5471316..5473048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179342.3 → NP_849673.1  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849673.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S9P1
    UniProtKB/TrEMBL
    A0A178W9Y0, A0A5S9ULT1, A0A7G2DT56
    Conserved Domains (1) summary
    pfam01248
    Location:29 → 124
    Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

  2. NM_101461.5 → NP_173045.1  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173045.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S9P1
    UniProtKB/TrEMBL
    A0A178W9Y0, A0A5S9ULT1, A0A7G2DT56
    Conserved Domains (1) summary
    pfam01248
    Location:29 → 124
    Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S9P1.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools