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Leucine-rich repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838143, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat family protein
Primary source
TAIR:AT1G15740
Locus tag
AT1G15740
See related
Araport:AT1G15740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H2.8; F7H2_8
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Sequence:
Chromosome: 1; NC_003070.9 (5410908..5414919)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRF-like 5 Neighboring gene Cobalamin biosynthesis CobW-like protein Neighboring gene ncRNA Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene ncRNA Neighboring gene Molecular chaperone Hsp40/DnaJ family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_101442.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat family protein
NP_563980.2
  • Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5410908..5414919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101442.4 → NP_563980.2  Leucine-rich repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563980.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8H1Q4, Q9C5C9
    Conserved Domains (3) summary
    sd00033
    Location:384 → 402
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:164 → 188
    LRR_AMN1; leucine-rich repeat [structural motif]
    NF033189
    Location:139 → 497
    internalin_A; class 1 internalin InlA
Nucleotide Protein
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