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E3 ubiquitin-protein ligase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838129, updated on 18-Sep-2024

Summary

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Official Full Name
E3 ubiquitin-protein ligase
Primary source
TAIR:AT1G15590
Locus tag
AT1G15590
See related
Araport:AT1G15590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16N11.26; T16N11_26
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (5367297..5368670)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene CYCLIN A2;3 Neighboring gene indole-3-acetic acid inducible 5 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001198075.1
NM_101428.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase
NP_001185004.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1).
NP_173012.2
  • BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5367297..5368670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198075.1 → NP_001185004.1  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185004.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1G301, Q3EDB8

  2. NM_101428.2 → NP_173012.2  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173012.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1G301, Q3EDB8
Nucleotide Protein
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