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hypothetical protein (DUF1644) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838114, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF1644)
Primary source
TAIR:AT1G15430
Locus tag
AT1G15430
See related
Araport:AT1G15430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9L1.39; F9L1_39
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (5304098..5306087)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene aspartate-glutamate racemase family Neighboring gene late embryogenesis abundant-like protein Neighboring gene WD repeat protein Neighboring gene periodic tryptophan protein 2 Neighboring gene tRNA-Trp Neighboring gene HCO3- transporter family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101413.4
NM_202106.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF1644)
NP_563977.1
  • Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 273 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_973835.1
  • Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5304098..5306087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101413.4 → NP_563977.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563977.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1T8, A0A654EAV6, Q9C5E6
    Conserved Domains (1) summary
    pfam07800
    Location:49 → 187
    DUF1644; Protein of unknown function (DUF1644)

  2. NM_202106.2 → NP_973835.1  hypothetical protein (DUF1644) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973835.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1T8, A0A654EAV6, Q9C5E6
    Conserved Domains (1) summary
    pfam07800
    Location:49 → 187
    DUF1644; Protein of unknown function (DUF1644)
Nucleotide Protein
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