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cotton fiber protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838108, updated on 18-Sep-2024

Summary

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Official Full Name
cotton fiber protein
Primary source
TAIR:AT1G15385
Locus tag
AT1G15385
See related
Araport:AT1G15385
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (5292712..5293338, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNARE-like superfamily protein Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene peptide deformylase 1A Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_179338.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cotton fiber protein
NP_849669.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5292712..5293338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179338.2 → NP_849669.1  cotton fiber protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849669.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W575, Q8L7A6
    Conserved Domains (1) summary
    pfam05553
    Location:41 → 67
    DUF761; Cotton fibre expressed protein
Nucleotide Protein
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