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SHN1 Integrase-type DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838105, updated on 18-Sep-2024

Summary

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Official Symbol
SHN1
Official Full Name
Integrase-type DNA-binding superfamily protein
Primary source
TAIR:AT1G15360
Locus tag
AT1G15360
See related
Araport:AT1G15360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtSHN1; F9L1.31; F9L1_31; SHINE 1; WAX INDUCER 1; WIN1
Summary
Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.
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Genomic context

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See SHN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (5283268..5284736)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DUF4050 family protein Neighboring gene miscRNA Neighboring gene SNARE-like superfamily protein Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Induced accumulation of cuticular waxes enhances drought tolerance in Arabidopsis by changes in development of stomata. Yang J, et al. Plant Physiol Biochem, 2011 Dec. PMID 22078383
  2. The transcription factor WIN1/SHN1 regulates Cutin biosynthesis in Arabidopsis thaliana. Kannangara R, et al. Plant Cell, 2007 Apr. PMID 17449808, Free PMC Article
  3. The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Aharoni A, et al. Plant Cell, 2004 Sep. PMID 15319479, Free PMC Article
  4. Overexpression of AtSHN1/WIN1 provokes unique defense responses. Sela D, et al. PLoS One, 2013. PMID 23922943, Free PMC Article
  5. MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri. Oshima Y, et al. Plant Cell, 2013 May. PMID 23709630, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Overexpression of AtSHN1/WIN1 provokes unique defense responses.
    Title: Overexpression of AtSHN1/WIN1 provokes unique defense responses.
  2. Data indicate that the MIXTA-like MYB transcription factors MYB106 and MYB16, which regulate epidermal cell morphology, also regulate cuticle development coordinately with WIN1/SHN1.
    Title: MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.
  3. when expression of the WIN1/SHN1 gene was induced there was increased expression of genes involved in wax development...
    Title: Induced accumulation of cuticular waxes enhances drought tolerance in Arabidopsis by changes in development of stomata.
  4. Silencing SHINE clade genes (SHN1/SHN2/SHN3) reduces flower cutin load and modifies petal cell wall structure.
    Title: SHINE transcription factors act redundantly to pattern the archetypal surface of Arabidopsis flower organs.
  5. Work identified WIN1, a putative acetylornithine transaminase, as Pseudomonas syringae HopW1-1-interacting plant proteins.
    Title: Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1.
  6. At least one of the cutin pathway genes, which encodes long-chain acyl-CoA synthetase LACS2, is likely to be directly targeted by WIN1.
    Title: The transcription factor WIN1/SHN1 regulates Cutin biosynthesis in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001332163.1
NM_101405.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity TAS
Traceable Author Statement
more info
 PubMed 
enables sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cutin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ethylene-activated signaling pathway TAS
Traceable Author Statement
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within wax metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure TAS
Traceable Author Statement
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Integrase-type DNA-binding superfamily protein
NP_172988.1
  • SHINE 1 (SHN1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 23; Plants - 5843; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5283268..5284736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101405.4 → NP_172988.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172988.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDZ0, Q9XI33
    UniProtKB/TrEMBL
    A0A178WNC4, A0A5S9UIT0, A0A7G2DTX1
    Conserved Domains (1) summary
    smart00380
    Location:6 → 68
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  2. NM_001332163.1 → NP_001322723.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDZ0, Q9XI33
    UniProtKB/TrEMBL
    A0A178WNC4, A0A5S9UIT0, A0A7G2DTX1
    Conserved Domains (1) summary
    smart00380
    Location:6 → 68
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XI33.1

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