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plant/protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837959, updated on 18-Sep-2024

Summary

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Official Full Name
plant/protein
Primary source
TAIR:AT1G13990
Locus tag
AT1G13990
See related
Araport:AT1G13990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7A19.8; F7A19_8
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (4794664..4796599)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 4 Neighboring gene beta-hexosaminidase (DUF1336) Neighboring gene sec7 domain-containing protein Neighboring gene VH1-interacting kinase Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001160862.1
NM_001160863.1
NM_101265.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant/protein
NP_001154334.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_001154335.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_563935.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4794664..4796599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101265.4 → NP_563935.1  plant/protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563935.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMB0, Q94F46, Q9XI88

  2. NM_001160863.1 → NP_001154335.1  plant/protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154335.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HSN5, Q9XI88

  3. NM_001160862.1 → NP_001154334.1  plant/protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154334.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HSN6, Q9LMF9
Nucleotide Protein
Heading Accession and Version

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