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alpha/beta-Hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837922, updated on 18-Sep-2024

Summary

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Official Full Name
alpha/beta-Hydrolases superfamily protein
Primary source
TAIR:AT1G13610
Locus tag
AT1G13610
See related
Araport:AT1G13610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21F23.4
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (4663831..4666130, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene root meristem growth factor-like protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene DNA glycosylase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001035965.2
NM_101231.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
alpha/beta-Hydrolases superfamily protein
NP_001031042.1
  • alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_172818.2
  • alpha/beta-Hydrolases superfamily protein; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G30380.2); Has 4490 Blast hits to 4478 proteins in 963 species: Archae - 8; Bacteria - 1669; Metazoa - 672; Fungi - 266; Plants - 333; Viruses - 11; Other Eukaryotes - 1531 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4663831..4666130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101231.4 → NP_172818.2  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172818.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W816, Q5XVL1, Q9FZ68
    Conserved Domains (1) summary
    COG1073
    Location:74 → 261
    FrsA; Fermentation-respiration switch protein FrsA, has esterase activity, DUF1100 family [Signal transduction mechanisms]

  2. NM_001035965.2 → NP_001031042.1  alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031042.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5XVL0
    Conserved Domains (2) summary
    COG1073
    Location:23 → 161
    FrsA; Fermentation-respiration switch protein FrsA, has esterase activity, DUF1100 family [Signal transduction mechanisms]
    pfam12695
    Location:23 → 145
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein
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