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F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837918, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT1G13570
Locus tag
AT1G13570
See related
Araport:AT1G13570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13B4.6; F13B4_6
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (4642124..4644422, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1262) Neighboring gene hypothetical protein (DUF1262) Neighboring gene aminoalcoholphosphotransferase 1 Neighboring gene LAG1 longevity assurance-like protein Neighboring gene phytosulfokine 1 precursor Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332071.1
NM_001332072.1
NM_101227.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box/RNI-like superfamily protein
NP_172814.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4642124..4644422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101227.3 → NP_172814.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172814.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7FLD2, Q9FZ70
    UniProtKB/TrEMBL
    A0A178W1D0, A0A5S9U8S3
    Conserved Domains (3) summary
    smart00579
    Location:346 → 414
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:135 → 156
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:6 → 45
    F-box; F-box domain

  2. NM_001332071.1 → NP_001321684.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARN3

  3. NM_001332072.1 → NP_001321685.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7FLD2, Q9FZ70
    UniProtKB/TrEMBL
    A0A178W1D0, A0A5S9U8S3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZ70.1

Gene LinkOut

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