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sodium/hydrogen exchanger (DUF1218) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837898, updated on 18-Sep-2024

Summary

Official Full Name
sodium/hydrogen exchanger (DUF1218)
Primary source
TAIR:AT1G13380
Locus tag
AT1G13380
See related
Araport:AT1G13380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6J4.13; T6J4_13
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Genomic context

Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (4588994..4590501, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Histone superfamily protein Neighboring gene translocase subunit seca Neighboring gene C2H2 and C2HC zinc fingers superfamily protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_101208.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
sodium/hydrogen exchanger (DUF1218)
NP_563929.1
  • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1); Has 523 Blast hits to 523 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 523; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4588994..4590501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101208.3NP_563929.1  sodium/hydrogen exchanger (DUF1218) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563929.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKX4, Q9FX59
    Conserved Domains (1) summary
    pfam06749
    Location:76154
    DUF1218; Protein of unknown function (DUF1218)