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Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837897, updated on 18-Sep-2024

Summary

Official Full Name
Histone superfamily protein
Primary source
TAIR:AT1G13370
Locus tag
AT1G13370
See related
Araport:AT1G13370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6J4.12; T6J4_12
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Genomic context

Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (4587780..4588661, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene sodium/hydrogen exchanger (DUF1218) Neighboring gene translocase subunit seca

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_101207.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Histone superfamily protein
NP_172794.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: root, inflorescence, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14571 Blast hits to 14563 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10588; Fungi - 2030; Plants - 1255; Viruses - 0; Other Eukaryotes - 698 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4587780..4588661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101207.3NP_172794.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172794.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCA8, Q9FX60
    UniProtKB/TrEMBL
    A0A178W8Y9, A0A5S9U8E1, A0A654E9I3, A6QRB8
    Conserved Domains (1) summary
    PTZ00018
    Location:1136
    PTZ00018; histone H3; Provisional