U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PIRL3 plant intracellular ras group-related LRR 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837855, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
PIRL3
Official Full Name
plant intracellular ras group-related LRR 3
Primary source
TAIR:AT1G12970
Locus tag
AT1G12970
See related
Araport:AT1G12970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13K23.23; F13K23_23; plant intracellular ras group-related LRR 3
Summary
Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PIRL3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (4423540..4425936)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root hair specific 2 Neighboring gene Ribosomal protein L18e/L15 superfamily protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene beta-1,4-N-acetylglucosaminyltransferase family protein Neighboring gene transmembrane protein, putative (DUF707)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Arabidopsis Plant Intracellular Ras-group LRR (PIRL) Family and the Value of Reverse Genetic Analysis for Identifying Genes that Function in Gametophyte Development. Forsthoefel NR, et al. Plants (Basel), 2013 Aug 9. PMID 27137390, Free PMC Article
  2. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_101168.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein serine/threonine kinase activity HDA PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within microgametogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
plant intracellular ras group-related LRR 3
NP_563921.1
  • plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4423540..4425936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101168.2 → NP_563921.1  plant intracellular ras group-related LRR 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563921.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W4Q3, Q9LPV2
    UniProtKB/TrEMBL
    A0A5S9U6J4, A0A654E9G0
    Conserved Domains (2) summary
    COG4886
    Location:185 → 385
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:163 → 185
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W4Q3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools