CLPP6 CLP protease proteolytic subunit 6 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Symbol: CLPP6
Official Full Name: CLP protease proteolytic subunit 6
Primary source: TAIR:AT1G11750
Locus tag: AT1G11750
See related: Araport:AT1G11750
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; CLP protease proteolytic subunit 6; F25C20.10; F25C20_10; NCLPP1; NCLPP6; NUCLEAR-ENCODED CLPP 1
Summary: One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
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Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

NM_001198037.1

Function	Evidence Code	Pubs
enables ATP-dependent peptidase activity	IEA Inferred from Electronic Annotation more info
enables serine-type endopeptidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chloroplast organization	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within photosynthesis	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast envelope	HDA more info	PubMed
located_in chloroplast stroma	HDA more info	PubMed
located_in chloroplast stroma	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast thylakoid	IDA Inferred from Direct Assay more info	PubMed
part_of chloroplastic endopeptidase Clp complex	IDA Inferred from Direct Assay more info	PubMed
located_in plastid stroma	IDA Inferred from Direct Assay more info	PubMed

NP_001184966.1

CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1).

NP_563893.1

CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 13333 Blast hits to 13329 proteins in 3010 species: Archae - 2; Bacteria - 8425; Metazoa - 145; Fungi - 82; Plants - 1079; Viruses - 86; Other Eukaryotes - 3514 (source: NCBI BLink).