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ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837718, updated on 18-Sep-2024

Summary

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Official Full Name
ankyrin repeat family protein
Primary source
TAIR:AT1G11740
Locus tag
AT1G11740
See related
Araport:AT1G11740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25C20.11; F25C20_11
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (3963054..3966850, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CLP protease proteolytic subunit 6 Neighboring gene Undecaprenyl pyrophosphate synthetase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101046.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ankyrin repeat family protein
NP_172639.2
  • ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G62050.1); Has 1132 Blast hits to 1026 proteins in 130 species: Archae - 4; Bacteria - 26; Metazoa - 550; Fungi - 29; Plants - 425; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3963054..3966850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101046.3 → NP_172639.2  ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172639.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WN86, A0A5S9TYP5, F4IAG4
    Conserved Domains (3) summary
    sd00045
    Location:77 → 108
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:194 → 524
    GPCR_chapero_1; GPCR-chaperone
    cl39094
    Location:82 → 131
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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