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RBP45B RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837708, updated on 18-Sep-2024

Summary

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Official Symbol
RBP45B
Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT1G11650
Locus tag
AT1G11650
See related
Araport:AT1G11650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRBP45B; F25C20.21; F25C20_21
Summary
Encodes an RNA binding protein with three RNA recognition motifs.
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Genomic context

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See RBP45B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (3914774..3918243)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene tRNA-Trp Neighboring gene uncharacterized protein Neighboring gene heat shock protein 70 (Hsp 70) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interacting protein partners of Arabidopsis RNA-binding protein AtRBP45b. Muthuramalingam M, et al. Plant Biol (Stuttg), 2017 May. PMID 28039930
  2. Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. Peal L, et al. Mol Cells, 2011 Jan. PMID 21120628, Free PMC Article
  3. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
  4. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
  5. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101037.4
NM_179310.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to ozone IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region HDA PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_172630.1
  • RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29660 Blast hits to 18296 proteins in 811 species: Archae - 14; Bacteria - 2273; Metazoa - 15265; Fungi - 3531; Plants - 5870; Viruses - 0; Other Eukaryotes - 2707 (source: NCBI BLink).
NP_849641.1
  • RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 20995 Blast hits to 13178 proteins in 763 species: Archae - 6; Bacteria - 1690; Metazoa - 10875; Fungi - 2403; Plants - 4255; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3914774..3918243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101037.4 → NP_172630.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172630.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z2Q4, F4I8Z2, Q8LBV8, Q9SAB3
    UniProtKB/TrEMBL
    A0A178WLD6, A0A5S9TWD7, A0A7G2DW29
    Conserved Domains (3) summary
    cd12344
    Location:63 → 142
    RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:154 → 233
    RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cl17169
    Location:260 → 331
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_179310.2 → NP_849641.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849641.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SAB3
    Conserved Domains (3) summary
    cd12344
    Location:63 → 142
    RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:154 → 233
    RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cl17169
    Location:260 → 306
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAB3.1

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