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lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837658, updated on 18-Sep-2024

Summary

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Official Full Name
lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
Primary source
TAIR:AT1G11170
Locus tag
AT1G11170
See related
Araport:AT1G11170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28P6.16; T28P6_16
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Sequence:
Chromosome: 1; NC_003070.9 (3740664..3744675)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene Secretory carrier membrane protein (SCAMP) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001331965.1
NM_001331966.1
NM_001331967.1
NM_001331968.1
NM_001331969.1
NM_001331970.1
NM_100989.5
NM_202080.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
lysine ketoglutarate reductase trans-splicing-like protein (DUF707)
NP_172583.2
  • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4); Has 308 Blast hits to 308 proteins in 23 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_973809.1
  • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G61240.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3740664..3744675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331964.1 → NP_001321494.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5L5, A0A1P8AR12

  2. NM_100989.5 → NP_172583.2  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172583.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9TS48, Q8S9J5
    Conserved Domains (1) summary
    pfam05212
    Location:83 → 386
    DUF707; Protein of unknown function (DUF707)

  3. NM_001331965.1 → NP_001321488.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5L5, A0A1P8AR16

  4. NM_001331966.1 → NP_001321493.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9TS48, Q8S9J5
    Conserved Domains (1) summary
    pfam05212
    Location:83 → 386
    DUF707; Protein of unknown function (DUF707)

  5. NM_001331967.1 → NP_001321491.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9TS48, Q8S9J5
    Conserved Domains (1) summary
    pfam05212
    Location:83 → 386
    DUF707; Protein of unknown function (DUF707)

  6. NM_001331968.1 → NP_001321492.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9TS48, Q8S9J5
    Conserved Domains (1) summary
    pfam05212
    Location:83 → 386
    DUF707; Protein of unknown function (DUF707)

  7. NM_202080.1 → NP_973809.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973809.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W670, F4I7E3
    Conserved Domains (1) summary
    pfam05212
    Location:83 → 313
    DUF707; Protein of unknown function (DUF707)

  8. NM_001331969.1 → NP_001321489.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5L5, A0A1P8AR16

  9. NM_001331970.1 → NP_001321490.1  lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AR15
Nucleotide Protein
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