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carboxyl-terminal peptidase, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837618, updated on 18-Sep-2024

Summary

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Official Full Name
carboxyl-terminal peptidase, putative (DUF239)
Primary source
TAIR:AT1G10750
Locus tag
AT1G10750
See related
Araport:AT1G10750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16B5.11; T16B5_11
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (3574807..3578783, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Clathrin adaptor complexes medium subunit family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene maternally expressed family protein Neighboring gene maternally expressed family protein Neighboring gene ncRNA Neighboring gene Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001331925.1
NM_100951.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
carboxyl-terminal peptidase, putative (DUF239)
NP_172545.1
  • Protein of Unknown Function (DUF239); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 789 Blast hits to 744 proteins in 31 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 764; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3574807..3578783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100951.4 → NP_172545.1  carboxyl-terminal peptidase, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172545.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5T9, Q84JS7
    Conserved Domains (2) summary
    pfam03080
    Location:238 → 460
    DUF239; Domain of unknown function (DUF239)
    pfam14365
    Location:119 → 225
    DUF4409; Domain of unknown function (DUF4409)

  2. NM_001331925.1 → NP_001322157.1  carboxyl-terminal peptidase, putative (DUF239) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AT45
Nucleotide Protein
Heading Accession and Version

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