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NEP-interacting protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837557, updated on 18-Sep-2024

Summary

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Official Full Name
NEP-interacting protein, putative (DUF239)
Primary source
TAIR:AT1G10190
Locus tag
AT1G10190
See related
Araport:AT1G10190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14N23.7; F14N23_7
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (3343686..3345632, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene NF-X-like 1 Neighboring gene LOW protein: exocyst complex component-like protein Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene mitogen-activated protein kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100893.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NEP-interacting protein, putative (DUF239)
NP_172490.1
  • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G15050.1); Has 640 Blast hits to 606 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 4; Plants - 629; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3343686..3345632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100893.4 → NP_172490.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172490.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WE34, A0A7G2DS37, Q8VYE1
    Conserved Domains (2) summary
    pfam03080
    Location:178 → 393
    DUF239; Domain of unknown function (DUF239)
    pfam14365
    Location:52 → 163
    DUF4409; Domain of unknown function (DUF4409)
Nucleotide Protein
Heading Accession and Version

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