U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OPT2 oligopeptide transporter 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837525, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
OPT2
Official Full Name
oligopeptide transporter 2
Primary source
TAIR:AT1G09930
Locus tag
AT1G09930
See related
Araport:AT1G09930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATOPT2; F21M12.32; F21M12_32; oligopeptide transporter 2
Summary
oligopeptide transporter
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See OPT2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (3227490..3230257, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene TRAF-type zinc finger-like protein Neighboring gene Phosphoglycerate mutase family protein Neighboring gene Phosphoglycerate mutase family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An oligopeptide transporter gene family in Arabidopsis. Koh S, et al. Plant Physiol, 2002 Jan. PMID 11788749, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oligopeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables oligopeptide transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
oligopeptide transporter 2
NP_172464.1
  • oligopeptide transporter 2 (OPT2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 4 (TAIR:AT5G64410.1); Has 1309 Blast hits to 1283 proteins in 148 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 834; Plants - 392; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3227490..3230257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100867.2 → NP_172464.1  oligopeptide transporter 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172464.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04514, Q1PFX3
    UniProtKB/TrEMBL
    A0A178WKF2, A0A5S9TJV3
    Conserved Domains (1) summary
    pfam03169
    Location:39 → 697
    OPT; OPT oligopeptide transporter protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04514.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools