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GXM3 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837488, updated on 18-Sep-2024

Summary

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Official Symbol
GXM3
Official Full Name
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
Primary source
TAIR:AT1G09610
Locus tag
AT1G09610
See related
Araport:AT1G09610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14J9.29; F14J9_29; glucuronoxylan methyltransferase 3
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Genomic context

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See GXM3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (3111694..3112873)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Translation protein SH3-like family protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase Neighboring gene uncharacterized protein Neighboring gene RAB GTPase 11C Neighboring gene Translation elongation factor EF1B, gamma chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Modification of the degree of 4-O-methylation of secondary wall glucuronoxylan. Yuan Y, et al. Plant Sci, 2014 Apr. PMID 24576763
  2. Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-o-methylation of glucuronic acid on xylan. Lee C, et al. Plant Cell Physiol, 2012 Nov. PMID 23045523
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100833.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucuronoxylan 4-O-methyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within xylan metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
NP_172432.1
  • Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3111694..3112873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100833.2 → NP_172432.1  glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172432.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80540, Q6NMK1
    UniProtKB/TrEMBL
    A0A178W7U8, A0A5S9THU7
    Conserved Domains (1) summary
    cl04661
    Location:55 → 281
    Polysacc_synt_4; Polysaccharide biosynthesis
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NMK1.1

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