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Translation protein SH3-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837486, updated on 18-Sep-2024

Summary

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Official Full Name
Translation protein SH3-like family protein
Primary source
TAIR:AT1G09590
Locus tag
AT1G09590
See related
Araport:AT1G09590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14J9.25
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (3106367..3107801)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene calcium uniporter-like protein (DUF607) Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  3. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
  4. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  5. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100831.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic large ribosomal subunit HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
located_in extracellular region HDA PubMed 
located_in nucleolus HDA PubMed 

General protein information

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Preferred Names
Translation protein SH3-like family protein
NP_563847.1
  • Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus, chloroplast; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G09690.1); Has 1439 Blast hits to 1439 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 709; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3106367..3107801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100831.4 → NP_563847.1  Translation protein SH3-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563847.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43291
    UniProtKB/TrEMBL
    A0A178WMH8, A0A178WPH9, A0A5S9TIE1
    Conserved Domains (1) summary
    PLN00190
    Location:1 → 158
    PLN00190; 60S ribosomal protein L21; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43291.2

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