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NF-YB4 nuclear factor Y, subunit B4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837424, updated on 18-Sep-2024

Summary

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Official Symbol
NF-YB4
Official Full Name
nuclear factor Y, subunit B4
Primary source
TAIR:AT1G09030
Locus tag
AT1G09030
See related
Araport:AT1G09030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''nuclear factor Y; F7G19.10; F7G19_10; nuclear factor Y; subunit B4; subunit B4''
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Genomic context

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See NF-YB4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (2908611..2909032, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NPK1-related protein kinase 1 Neighboring gene glycoside hydrolase family 2 protein Neighboring gene sucrose nonfermenting-like protein Neighboring gene arginine-glutamic acid dipeptide repeat protein Neighboring gene arginine-glutamic acid dipeptide repeat protein Neighboring gene JmjC domain protein JMJ24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis. Warpeha KM, et al. Plant Physiol, 2007 Apr. PMID 17322342, Free PMC Article
  2. Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits. Calvenzani V, et al. PLoS One, 2012. PMID 22912760, Free PMC Article
  3. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235
  4. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100774.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nuclear factor Y, subunit B4
NP_172377.1
  • ''nuclear factor Y, subunit B4'' (NF-YB4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B5 (TAIR:AT2G47810.1); Has 1487 Blast hits to 1487 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 373; Plants - 505; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2908611..2909032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100774.2 → NP_172377.1  nuclear factor Y, subunit B4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172377.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0JPZ3, O04027
    UniProtKB/TrEMBL
    A0A178WJ11, A0A384L7L3, C0SUU0
    Conserved Domains (1) summary
    pfam00808
    Location:6 → 71
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04027.1

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