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PGSIP5 plant glycogenin-like starch initiation protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837420, updated on 18-Sep-2024

Summary

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Official Symbol
PGSIP5
Official Full Name
plant glycogenin-like starch initiation protein 5
Primary source
TAIR:AT1G08990
Locus tag
AT1G08990
See related
Araport:AT1G08990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7G19.14; F7G19_14; Glucuronic Acid Substitution of Xylan 5; GUX5; plant glycogenin-like starch initiation protein 5
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Genomic context

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See PGSIP5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (2888427..2890965)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene amidase 1 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene NPK1-related protein kinase 1 Neighboring gene glycoside hydrolase family 2 protein Neighboring gene sucrose nonfermenting-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases. Rennie EA, et al. Plant Physiol, 2012 Aug. PMID 22706449, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100770.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant glycogenin-like starch initiation protein 5
NP_172373.3
  • plant glycogenin-like starch initiation protein 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 4 (TAIR:AT1G54940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2888427..2890965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100770.5 → NP_172373.3  plant glycogenin-like starch initiation protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172373.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HZC3, O04031
    UniProtKB/TrEMBL
    A0A178W4L8, W8QPB2
    Conserved Domains (1) summary
    cd02537
    Location:278 → 516
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HZC3.1

Gene LinkOut

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